The complete genome sequence for a Turkish isolate of Wheat dwarf virus (WDV) from barley confirms the presence of two distinct WDV strains

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dc.contributor.authorKoklu, Gassan
dc.contributor.authorRamsell, Jon N. E.
dc.contributor.authorKvarnheden, Anders
dc.date.accessioned2024-06-12T11:02:32Z
dc.date.available2024-06-12T11:02:32Z
dc.date.issued2007
dc.departmentTrakya Üniversitesien_US
dc.description.abstractThe complete genome for a barley isolate of Wheat dwarf virus (WDV) from Tekirdaag, Turkey, WDV-Bar[TR], was isolated and sequenced. The genome was found to be 2739 nucleotides long, which is shorter than wheat-infecting WDV isolates, and with a genome organization typical for mastreviruses. The complete genome of WDV-Bar[TR] showed 83-84% nucleotide identity to wheat isolates of WDV, with the non-coding regions SIR and LIR least conserved (72-74% identity). The deduced amino acid sequences for Rep and RepA were most conserved (92-93%), while CP and MP were less conserved (87% and 79-80%, respectively). The identity to other mastrevirus species was significantly lower. In phylogenetic analyses, the WDV isolates formed a distinct clade, well separated from the other mastreviruses with the wheat isolates grouping closely together. Phylogenetic analyses of WDV-Bar[TR], the partial sequence for another Turkish barley isolate (WDV-Bar[TR2]) and published WDV sequences further supported the division of WDV into two distinct strains. The barley strain could also be divided into three subtypes based on relationships and geographic origin. This study shows the first complete published sequence for a barley isolate of WDV.en_US
dc.identifier.doi10.1007/s11262-006-0029-0
dc.identifier.endpage366en_US
dc.identifier.issn0920-8569
dc.identifier.issn1572-994X
dc.identifier.issue3en_US
dc.identifier.pmid16927119en_US
dc.identifier.scopus2-s2.0-33947540842en_US
dc.identifier.scopusqualityQ3en_US
dc.identifier.startpage359en_US
dc.identifier.urihttps://doi.org/10.1007/s11262-006-0029-0
dc.identifier.urihttps://hdl.handle.net/20.500.14551/21318
dc.identifier.volume34en_US
dc.identifier.wosWOS:000245177300014en_US
dc.identifier.wosqualityQ4en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.indekslendigikaynakPubMeden_US
dc.language.isoenen_US
dc.publisherSpringeren_US
dc.relation.ispartofVirus Genesen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectGeminivirusen_US
dc.subjectHordeum Vulgareen_US
dc.subjectMastrevirusen_US
dc.subjectPhylogenyen_US
dc.subjectTurkeyen_US
dc.subjectWheat Dwarf Virusen_US
dc.subjectMaize-Streak-Virusen_US
dc.subjectComplete Nucleotide-Sequenceen_US
dc.subjectDna-Synthesisen_US
dc.subjectGeminivirusen_US
dc.subjectVirionen_US
dc.subjectIdentificationen_US
dc.subjectReplicationen_US
dc.subjectExpressionen_US
dc.subjectDiversityen_US
dc.subjectMoleculesen_US
dc.titleThe complete genome sequence for a Turkish isolate of Wheat dwarf virus (WDV) from barley confirms the presence of two distinct WDV strainsen_US
dc.typeArticleen_US

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